Publications

Saving Data Journalism: Using ReproZip-Web to Capture Dynamic Websites for Future Reuse
K. Boss, V. Steeves, R. Rampin, F. Chirigati, and B. Hoffman
In LIS Scholarship Archive, doi:10.31229/osf.io/khtdr, 2019

Understanding Spatio-Temporal Urban Processes
L. Rocha, A. Bessa, F. Chirigati, E. OFriel, M. Moro, and J. Freire
In IEEE International Conference on Big Data (IEEE BigData), 2019

ReproServer: Making Reproducibility Easier and Less Intrusive
R. Rampin, F. Chirigati, V. Steeves, and J. Freire
In arXiv, 2018

Provenance and the Different Flavors of Computational Reproducibility
J. Freire and F. Chirigati
In IEEE Data Engineering Bulletin, 41(1), pp. 15-26, 2018

Using ReproZip for Reproducibility and Library Services
V. Steeves, R. Rampin, and F. Chirigati
In IASSIST Quarterly, 42(1), pp. 1-14, 2017

Querying and Exploring Polygamous Relationships in Urban Spatio-Temporal Data Sets
Y. Chan, F. Chirigati, H. Doraiswamy, C. Silva, and J. Freire
In Proceedings of the 2017 ACM SIGMOD International Conference on Management of Data (SIGMOD), pp. 1643-1646, 2017
Honorable Mention, SIGMOD Best Demonstration Award

Provenance and Reproducibility
F. Chirigati and J. Freire
In L. Liu and M. T. Özsu (Eds.), Encyclopedia of Database Systems, 2017

HESML: A Scalable Ontology-based Semantic Similarity Measures Library with a Set of Reproducible Experiments and a Replication Dataset
J. Lastra-Díaz, A. García-Serrano, M. Batet, M. Fernández, and F. Chirigati
In Information Systems, vol. 66, pp. 97-118, 2017
Reproducibility Paper, Reviewer

Glossary
A. Rokem and F. Chirigati
In J. Kitzes, D. Turek, and F. Deniz (Eds.), The Practice of Reproducible Research: Case Studies and Lessons from the Data-Intensive Sciences, 2017

Virtual Lightweight Snapshots for Consistent Analytics in NoSQL Stores
F. Chirigati, J. Siméon, M. Hirzel, and J. Freire
In Proceedings of the 32nd International Conference on Data Engineering (ICDE), pp. 1310-1321, 2016
We have made the plots reproducible using ReproZip -- check it out!

Exploring What not to Clean in Urban Data: A Study Using New York City Taxi Trips
J. Freire, A. Bessa, F. Chirigati, H. T. Vo, and K. Zhao
In IEEE Data Engineering Bulletin, 39(2), pp. 63-77, 2016

ReproZip: The Reproducibility Packer
R. Rampin, F. Chirigati, D. Shasha, J. Freire, and V. Steeves
In Journal of Open Source Software (JOSS), 2016

ReproZip: Computational Reproducibility With Ease
F. Chirigati, R. Rampin, D. Shasha, and J. Freire
In Proceedings of the 2016 ACM SIGMOD International Conference on Management of Data (SIGMOD), pp. 2085-2088, 2016

Reproducible Experiments on Dynamic Resource Allocation in Cloud Data Centers
A. Wolke, M. Bichler, F. Chirigati, and V. Steeves
In Information Systems, vol. 59, pp. 98-101, 2016
Reproducibility Paper, Reviewer

Knowledge Exploration Using Tables on the Web
F. Chirigati, J. Liu, F. Korn, Y. Wu, C. Yu, and H. Zhang
In Proceedings of the VLDB Endowment (PVLDB), 10(3), pp. 193-204, 2016

A Collaborative Approach to Computational Reproducibility
F. Chirigati, R. Capone, R. Rampin, J. Freire, and D. Shasha
In Information Systems, vol. 59, pp. 95-97, 2016

Data Polygamy: The Many-Many Relationships among Urban Spatio-Temporal Data Sets
F. Chirigati, H. Doraiswamy, T. Damoulas, and J. Freire
In Proceedings of the 2016 ACM SIGMOD International Conference on Management of Data (SIGMOD), pp. 1011-1025, 2016
SIGMOD Most Reproducible Paper Award
We have made the plots reproducible using ReproZip -- check it out!

YesWorkflow: A User-Oriented, Language-Independent Tool for Recovering Workflow Information from Scripts
T. McPhillips, T. Song, T. Kolisnik, S. Aulenbach, K. Belhajjame, R. Kyle Bocinsky, Y. Cao, J. Cheney, F. Chirigati, S. Dey, J. Freire, C. Jones, J. Hanken, K. W. Kintigh, T. A. Kohler, D. Koop, J. A. Macklin, P. Missier, M. Schildhauer, C. Schwalm, Y. Wei, M. Bieda, B. Ludäscher
In International Journal of Digital Curation (IJDC), 10(1), pp. 298-313, 2015

noWorkflow: Capturing and Analyzing Provenance of Scripts
L. Murta, V. Braganholo, F. Chirigati, D. Koop, and J. Freire
In Provenance and Annotation of Data and Processes, vol. 8628, Lecture Notes in Computer Science (LNCS), pp. 71-83, Springer International Publishing, 2015

Reproducibility Using VisTrails
J. Freire, D. Koop, F. Chirigati, and C. Silva
In V. Stodden, F. Leisch, and R. Peng (Eds.), Implementing Reproducible Research (The R Series), 2014

The PBase Scientific Workflow Provenance Repository
V. Cuevas-Vicenttín, P. Kianmajd, B. Ludäscher, P. Missier, F. Chirigati, Y. Wei, D. Koop, and S. Dey
In International Journal of Digital Curation (IJDC), 9(2), pp. 28-38, 2014

Provenance Storage, Querying, and Visualization in PBase
V. Cuevas-Vicenttín, P. Kianmajd, B. Ludäscher, P. Missier, F. Chirigati, Y. Wei, D. Koop, and S. Dey
In Proceedings of the International Provenance and Annotation Workshop 2014 (IPAW), Poster Session, 2014

The More the Merrier: Efficient Multi-Source Graph Traversal
M. Then, M. Kaufmann, F. Chirigati, T. Hoang-Vu, K. Pham, A. Kemper, T. Neumann, and H. T. Vo
In Proceedings of the VLDB Endowment (PVLDB), 8(4), pp. 449-460, 2014

VisTrails Provenance Traces for Benchmarking
F. Chirigati, D. Koop, J. Freire, and C. Silva
In Proceedings of the 2013 Joint EDBT/ICDT Workshops, pp. 323-324, 2013

ReproZip: Using Provenance to Support Computational Reproducibility
F. Chirigati, D. Shasha, and J. Freire
In Proceedings of the 5th USENIX conference on Theory and Practice of Provenance (TaPP), 2013

Packing Experiments for Sharing and Publication
F. Chirigati, D. Shasha, and J. Freire
In Proceedings of the 2013 International Conference on Management of Data (SIGMOD), pp. 977-980, 2013

A Computational Reproducibility Benchmark
F. Chirigati, M. Troyer, D. Shasha, and J. Freire
In IEEE Data Engineering Bulletin, 36(4), pp. 54-59, 2013

Chiron: A Parallel Engine for Algebraic Scientific Workflows
E. Ogasawara, J. Dias, V. Souza, F. Chirigati, D. Oliveira, F. Porto, P. Valduriez, and M. Mattoso
In Journal of Concurrency and Computation: Practice and Experience, 25(16), pp. 2327-2341, 2013

Towards Integrating Workflow and Database Provenance
F. Chirigati and J. Freire
In Provenance and Annotation of Data and Processes, vol. 7525, Lecture Notes in Computer Science (LNCS), pp. 11-23, Springer Berlin / Heidelberg, 2012

Evaluating Parameter Sweep Workflows in High Performance Computing
F. Chirigati, V. Souza, E. Ogasawara, D. Oliveira, J. Dias, F. Porto, P. Valduriez, and M. Mattoso
In Proceedings of the 1st International Workshop on Scalable Workflow Enactment Engines and Technologies (SWEET), article 2, 2012

Similarity-Based Workflow Clustering
V. Souza, F. Chirigati, K. Maia, E. Ogasawara, D. Oliveira, V. Braganholo, L. Murta, and M. Mattoso
In Journal of Computational Interdisciplinary Sciences, vol. 2, pp. 23-35, 2011

GExpLine: A Tool for Supporting Experiment Composition
D. Oliveira, E. Ogasawara, F. Chirigati, V. Souza, L. Murta, and M. Mattoso
In Provenance and Annotation of Data and Processes, vol. 6378, Lecture Notes in Computer Science (LNCS), pp. 251-259, 2010

Scientific Workflow Management System Applied to Uncertainty Quantification in Large Eddy Simulation
G. Guerra, F. Rochinha, R. Elias, A. Coutinho, V. Braganholo, D. Oliveira, E. Ogasawara, F. Chirigati, and M. Mattoso
In Proceedings of the 30th Iberian-Latin-American Congress on Computational Methods in Engineering (CILAMCE), 2009

Exploring Many Task Computing in Scientific Workflows
E. Ogasawara, D. Oliveira, F. Chirigati, C. E. Barbosa, R. Elias, V. Braganholo, A. Coutinho, and M. Mattoso
In Proceedings of the 2nd Workshop on Many-Task Computing on Grids and Supercomputers, International Conference for High Performance, Networking, Storage and Analysis (SC), 2009

A Conception Process for Abstract Workflows: An Example on Deep Water Oil Exploitation Domain
W. Martinho, E. Ogasawara, D. Oliveira, F. Chirigati, F. Correa, B. Jacob, I. Santos, G. H. Travassos, and M. Mattoso
In Proceedings of the 5th IEEE International Conference on e-Science - Poster Session, 2009

Using Explicit Control Processes in Distributed Workflows to Gather Provenance
S. M. S. Cruz, F. Chirigati, R. Dahis, M. L. M. Campos, and M. Mattoso
In Provenance and Annotation of Data and Processes, vol. 5272, Lecture Notes in Computer Science (LNCS), pp. 186-199, Springer Berlin / Heidelberg, 2008